Genome Profile DataBase (GPDB) ?
GPDB has been developed to provide and compare features of the fully
sequenced organisms in a graphic and easy-reading way. We focus on these
prokaryotes including bacteria and archaea. In this post-genome era,
we try to grab the information derived from both nucleotide and protein
sequence in a genome-wide scale. We provide some "Genome Profile",
develop on-line graphic browsing interface and use hierarchical clustering
method to compare and view the difference between these organisms. The
original sequence data and annotations are from NCBI
GeneBank and RefSeq
databases. The species name system is from Taxonomy
database. We wrote the perl
program called "Genome Profile Pipeline" which can automatically
mirror data from NCBI ftp site and continue to parse, caculate, and
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